Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00497.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3170
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34


Found at i:3084 original size:24 final size:24

Alignment explanation


    Indices: 3057--3103  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       3047 TTTAGAAAAT

                                     
       3057 TTTGTATTTA-CGTTTTGAGGGTTC
          1 TTTGTATTTAGCGTTTT-AGGGTTC

                 *     *           
       3081 TTTGTTTTTAGGGTTTTAGGGTT
          1 TTTGTATTTAGCGTTTTAGGGTT

       3104 TAATTTTTAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  24   15  0.75
  25    5  0.25

ACGTcount: A:0.11, C:0.04, G:0.28, T:0.57


Consensus pattern (24 bp):   
TTTGTATTTAGCGTTTTAGGGTTC
Done.