Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00499.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2371
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:16 original size:5 final size:5

Alignment explanation


    Indices: 7--43  Score: 56
    Period size: 5  Copynumber: 7.4  Consensus size: 5

          1 AAGACT

                                            *   *       
          7 ATAGA ATAGA ATAGA ATAGA ATAGA ATCGA GTAGA AT
          1 ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA AT

         44 GTGTACGCTC


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   5   28  1.00

ACGTcount: A:0.54, C:0.03, G:0.22, T:0.22


Consensus pattern (5 bp):   
ATAGA

Done.