Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00509.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3287
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34


Found at i:601 original size:15 final size:15

Alignment explanation


    Indices: 578--611  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        568 TTCCTAGTGG

                *          
        578 ATGATAATGATGATC
          1 ATGACAATGATGATC

                          *
        593 ATGACAATGATGATG
          1 ATGACAATGATGATC

                
        608 ATGA
          1 ATGA

        612 TGTTGCATTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29


Consensus pattern (15 bp):   
ATGACAATGATGATC
Done.