Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00514.N6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.35


Found at i:636 original size:43 final size:43

Alignment explanation


    Indices: 575--675  Score: 184
    Period size: 43  Copynumber: 2.3  Consensus size: 43

        565 TTAATTTTTA

                     *                                *
        575 TGACCTTTAACGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCT
          1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCC

                                                       
        618 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCC
          1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCC

                           
        661 TGACCTTTAGCGGCG
          1 TGACCTTTAGCGGCG

        676 CCTTTTTAAA


Statistics
Matches: 56,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  43   56  1.00

ACGTcount: A:0.21, C:0.23, G:0.32, T:0.25


Consensus pattern (43 bp):   
TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCC
Done.