Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00520.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4563
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:54 original size:16 final size:17

Alignment explanation


    Indices: 33--65  Score: 59
    Period size: 16  Copynumber: 2.0  Consensus size: 17

         23 AAAGCAAAGG

                             
         33 AAGAAAAA-AAAGAAAA
          1 AAGAAAAAGAAAGAAAA

                             
         49 AAGAAAAAGAAAGAAAA
          1 AAGAAAAAGAAAGAAAA

         66 GGCTATGAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    8  0.50
  17    8  0.50

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (17 bp):   
AAGAAAAAGAAAGAAAA
Done.