Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00553.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4158
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33


Found at i:206 original size:2 final size:2

Alignment explanation


    Indices: 199--239  Score: 73
    Period size: 2  Copynumber: 20.0  Consensus size: 2

        189 ACAAGCCAAA

                                                                        
        199 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC TAC AC
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC -AC AC

        240 TAGGAAGAGA


Statistics
Matches: 38,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   2   36  0.95
   3    2  0.05

ACGTcount: A:0.49, C:0.49, G:0.00, T:0.02


Consensus pattern (2 bp):   
AC

Done.