Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00555.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 933

Length: 1555
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25


Found at i:30 original size:2 final size:2

Alignment explanation


    Indices: 23--72  Score: 100
    Period size: 2  Copynumber: 25.0  Consensus size: 2

         13 TCCCAATCCC

                                                                          
         23 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

                       
         65 GA GA GA GA
          1 GA GA GA GA

         73 AAAGAAACAG


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   48  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
GA

Done.