Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00563.N7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2068
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37


Found at i:390 original size:82 final size:82

Alignment explanation


    Indices: 253--417  Score: 303
    Period size: 82  Copynumber: 2.0  Consensus size: 82

        243 GTTCATTACA

                                      *                                      
        253 GTATAAAAGAAAATTAGTTCTCTGGTGACTAGTGTTGGCCTTTCCAGTGATTCCTAGTAATGATT
          1 GTATAAAAGAAAATTAGTTCTCTGGTCACTAGTGTTGGCCTTTCCAGTGATTCCTAGTAATGATT

                    *        
        318 TAAATCTTGTAAATCAT
         66 TAAATCTTATAAATCAT

                                                                      *      
        335 GTATAAAAGAAAATTAGTTCTCTGGTCACTAGTGTTGGCCTTTCCAGTGATTCCTAGTGATGATT
          1 GTATAAAAGAAAATTAGTTCTCTGGTCACTAGTGTTGGCCTTTCCAGTGATTCCTAGTAATGATT

                             
        400 TAAATCTTATAAATCAT
         66 TAAATCTTATAAATCAT

             
        417 G
          1 G

        418 GTAAGTGTCT


Statistics
Matches: 80,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  82   80  1.00

ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38


Consensus pattern (82 bp):   
GTATAAAAGAAAATTAGTTCTCTGGTCACTAGTGTTGGCCTTTCCAGTGATTCCTAGTAATGATT
TAAATCTTATAAATCAT
Done.