Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00567.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2208
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:539 original size:18 final size:18

Alignment explanation


    Indices: 516--554  Score: 60
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        506 TTGGCGGCCC

                      *       
        516 TGGTGGATCACGCTTCTT
          1 TGGTGGATCAAGCTTCTT

                        *     
        534 TGGTGGATCAAGTTTCTT
          1 TGGTGGATCAAGCTTCTT

               
        552 TGG
          1 TGG

        555 CTTTGATTAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.13, C:0.15, G:0.31, T:0.41


Consensus pattern (18 bp):   
TGGTGGATCAAGCTTCTT
Done.