Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00572.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1350
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37


Found at i:1137 original size:25 final size:25

Alignment explanation


    Indices: 1109--1166  Score: 91
    Period size: 25  Copynumber: 2.4  Consensus size: 25

       1099 AATTTGATAT

                                     
       1109 TTCAGCAAAGAAGGCATTGTTGAGA
          1 TTCAGCAAAGAAGGCATTGTTGAGA

                *  *                 
       1134 TTCAACAGAGAAGGCATTGTTGAGA
          1 TTCAGCAAAGAAGGCATTGTTGAGA

                     
       1159 TTC-GCAAA
          1 TTCAGCAAA

       1167 CTCAATAAAT


Statistics
Matches: 29,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  24    3  0.10
  25   26  0.90

ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24


Consensus pattern (25 bp):   
TTCAGCAAAGAAGGCATTGTTGAGA
Done.