Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00589.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 981

Length: 1636
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:1212 original size:41 final size:41

Alignment explanation


    Indices: 1147--1228  Score: 128
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       1137 CCGCTCCAAC

                      *        *          *          
       1147 CTCTTTATAACCTCCCACAGATAAGTACCAGAAGGCAAATG
          1 CTCTTTATAAACTCCCACAAATAAGTACCACAAGGCAAATG

                            *                        
       1188 CTCTTTATAAACTCCCTCAAATAAGTACCACAAGGCAAATG
          1 CTCTTTATAAACTCCCACAAATAAGTACCACAAGGCAAATG

       1229 GTCGAGCTAT


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  41   37  1.00

ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23


Consensus pattern (41 bp):   
CTCTTTATAAACTCCCACAAATAAGTACCACAAGGCAAATG
Done.