Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00596.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1130
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:50 original size:7 final size:7

Alignment explanation


    Indices: 38--67  Score: 53
    Period size: 7  Copynumber: 4.4  Consensus size: 7

         28 AGAAGGCCTT

                   
         38 CAAAAAA
          1 CAAAAAA

                   
         45 CAAAAAA
          1 CAAAAAA

                   
         52 CAAAAAA
          1 CAAAAAA

                   
         59 -AAAAAA
          1 CAAAAAA

               
         65 CAA
          1 CAA

         68 TTAGAACATC


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   6    6  0.27
   7   16  0.73

ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00


Consensus pattern (7 bp):   
CAAAAAA

Found at i:62 original size:13 final size:14

Alignment explanation


    Indices: 38--67  Score: 53
    Period size: 13  Copynumber: 2.2  Consensus size: 14

         28 AGAAGGCCTT

                          
         38 CAAAAAACAAAAAA
          1 CAAAAAACAAAAAA

                          
         52 CAAAAAA-AAAAAA
          1 CAAAAAACAAAAAA

               
         65 CAA
          1 CAA

         68 TTAGAACATC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    9  0.56
  14    7  0.44

ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00


Consensus pattern (14 bp):   
CAAAAAACAAAAAA
Done.