Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00602.N9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1998
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37


Found at i:692 original size:111 final size:110

Alignment explanation


    Indices: 499--723  Score: 369
    Period size: 111  Copynumber: 2.0  Consensus size: 110

        489 GGTGTTTATA

                  *   *                   *                                  
        499 TTGGATGTTCGTTGCTTAATAGATGGTTCTGTATTGAATATTAATAATGGCTCCTACAGTAATGA
          1 TTGGATATTCATTGCTTAATAGATGGTTCTATATTGAATATTAATAATGGCTCCTACAGTAATGA

               * *                               *       
        564 AAAGTGACTATTGTTCTTTTTTCTTCTTCAAGCTTTTTAGATATT
         66 AAAATAACTATTGTTCTTTTTTCTTCTTCAAGCTTTTAAGATATT

                                                                             
        609 TTGGATATTCATTGCTTAATTAGATGGTTCTATATTGAATATTAATAATGGCTCCTACAGTAATG
          1 TTGGATATTCATTGCTTAA-TAGATGGTTCTATATTGAATATTAATAATGGCTCCTACAGTAATG

                    * *                                   
        674 AAAAATAATTGTTGTTCTTTTTTCTTCTTCAAGCTTTTAAGATATT
         65 AAAAATAACTATTGTTCTTTTTTCTTCTTCAAGCTTTTAAGATATT

                
        720 TTGG
          1 TTGG

        724 TTATATATGT


Statistics
Matches: 106,  Mismatches: 8, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
 110   17  0.16
 111   89  0.84

ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46


Consensus pattern (110 bp):   
TTGGATATTCATTGCTTAATAGATGGTTCTATATTGAATATTAATAATGGCTCCTACAGTAATGA
AAAATAACTATTGTTCTTTTTTCTTCTTCAAGCTTTTAAGATATT
Done.