Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00606.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2683
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32


Found at i:1403 original size:5 final size:5

Alignment explanation


    Indices: 1390--1423  Score: 59
    Period size: 5  Copynumber: 6.8  Consensus size: 5

       1380 CATTAATCTG

                      *                             
       1390 GTCTA GTCTG GTCTA GTCTA GTCTA GTCTA GTCT
          1 GTCTA GTCTA GTCTA GTCTA GTCTA GTCTA GTCT

       1424 CCTTTGTCTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   5   27  1.00

ACGTcount: A:0.15, C:0.21, G:0.24, T:0.41


Consensus pattern (5 bp):   
GTCTA

Found at i:1684 original size:15 final size:16

Alignment explanation


    Indices: 1664--1698  Score: 54
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1654 TTTTTTTAAT

                            
       1664 TTCTAAGT-AAGGAAA
          1 TTCTAAGTAAAGGAAA

                           *
       1679 TTCTAAGTAAAGGAAT
          1 TTCTAAGTAAAGGAAA

                
       1695 TTCT
          1 TTCT

       1699 TTTTGTCCTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  15    8  0.44
  16   10  0.56

ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34


Consensus pattern (16 bp):   
TTCTAAGTAAAGGAAA

Done.