Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00616.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3260
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29


Found at i:997 original size:21 final size:21

Alignment explanation


    Indices: 973--1030  Score: 80
    Period size: 21  Copynumber: 2.8  Consensus size: 21

        963 TGATGCTGGG

                                 
        973 AGGATGTCATTTGATGCACCA
          1 AGGATGTCATTTGATGCACCA

                    *         *  
        994 AGGATGTCTTTTGATGCAGCA
          1 AGGATGTCATTTGATGCACCA

              *       *     
       1015 AGAATGTCATGTGATG
          1 AGGATGTCATTTGATG

       1031 ATCCCAGATA


Statistics
Matches: 32,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   32  1.00

ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31


Consensus pattern (21 bp):   
AGGATGTCATTTGATGCACCA
Done.