Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00617.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3585
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:916 original size:68 final size:68

Alignment explanation


    Indices: 836--972  Score: 274
    Period size: 68  Copynumber: 2.0  Consensus size: 68

        826 CTATCTAAAA

                                                                             
        836 TGCTCCTTTCCTAAGTTGCTACAGGAACTCGTGGTGGTGATGTTTGCATACTAATTTCTCCAAGT
          1 TGCTCCTTTCCTAAGTTGCTACAGGAACTCGTGGTGGTGATGTTTGCATACTAATTTCTCCAAGT

               
        901 TTC
         66 TTC

                                                                             
        904 TGCTCCTTTCCTAAGTTGCTACAGGAACTCGTGGTGGTGATGTTTGCATACTAATTTCTCCAAGT
          1 TGCTCCTTTCCTAAGTTGCTACAGGAACTCGTGGTGGTGATGTTTGCATACTAATTTCTCCAAGT

               
        969 TTC
         66 TTC

             
        972 T
          1 T

        973 TACTTTTAGG


Statistics
Matches: 69,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  68   69  1.00

ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39


Consensus pattern (68 bp):   
TGCTCCTTTCCTAAGTTGCTACAGGAACTCGTGGTGGTGATGTTTGCATACTAATTTCTCCAAGT
TTC
Done.