Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00795.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3886
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29


Found at i:631 original size:72 final size:72

Alignment explanation


    Indices: 514--659  Score: 274
    Period size: 72  Copynumber: 2.0  Consensus size: 72

        504 GATGAAGAAA

                                                            *  *             
        514 AATAAGGAGATGGCAAAGGAGAGCTTTAAAGGCCGTAATTTTTCTTCCGACGACCAACAATACTT
          1 AATAAGGAGATGGCAAAGGAGAGCTTTAAAGGCCGTAATTTTTCTTCCAACAACCAACAATACTT

                   
        579 GAATCTG
         66 GAATCTG

                                                                             
        586 AATAAGGAGATGGCAAAGGAGAGCTTTAAAGGCCGTAATTTTTCTTCCAACAACCAACAATACTT
          1 AATAAGGAGATGGCAAAGGAGAGCTTTAAAGGCCGTAATTTTTCTTCCAACAACCAACAATACTT

                   
        651 GAATCTG
         66 GAATCTG

              
        658 AA
          1 AA

        660 GCTTACTGGC


Statistics
Matches: 72,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  72   72  1.00

ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25


Consensus pattern (72 bp):   
AATAAGGAGATGGCAAAGGAGAGCTTTAAAGGCCGTAATTTTTCTTCCAACAACCAACAATACTT
GAATCTG
Done.