Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00656.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 336

Length: 561
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32


Found at i:296 original size:30 final size:30

Alignment explanation


    Indices: 260--319  Score: 84
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        250 GTTTTGACGC

                         ** *             
        260 TGGAGGAGGTGGCGGTGGTGGTGGTGGTGG
          1 TGGAGGAGGTGGCCATAGTGGTGGTGGTGG

                      *                   
        290 TGGAGGAGGTTGCCATAGTGGTGGTGGTGG
          1 TGGAGGAGGTGGCCATAGTGGTGGTGGTGG

        320 CTGTGGTGGT


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  30   26  1.00

ACGTcount: A:0.10, C:0.05, G:0.60, T:0.25


Consensus pattern (30 bp):   
TGGAGGAGGTGGCCATAGTGGTGGTGGTGG
Done.