Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00796.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3416
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38


Found at i:2170 original size:25 final size:25

Alignment explanation


    Indices: 2139--2189  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2129 ATTTTTAGTT

                                     
       2139 TTCGCCTTAGTTTTCTTGAGTTTTC
          1 TTCGCCTTAGTTTTCTTGAGTTTTC

                                     
       2164 TTCGCCTTAGTTTTCTTGAGTTTTC
          1 TTCGCCTTAGTTTTCTTGAGTTTTC

             
       2189 T
          1 T

       2190 CTTAAGGGTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.08, C:0.20, G:0.16, T:0.57


Consensus pattern (25 bp):   
TTCGCCTTAGTTTTCTTGAGTTTTC
Done.