Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00676.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2944
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33


Found at i:2610 original size:98 final size:98

Alignment explanation


    Indices: 2441--2638  Score: 378
    Period size: 98  Copynumber: 2.0  Consensus size: 98

       2431 TTTGTCTAAA

                                                                             
       2441 GATAGAATTATAAGTCTCCCAATGAAACTTTGGATCCTTCATTTATAGCATTTCTGAAGAATGAC
          1 GATAGAATTATAAGTCTCCCAATGAAACTTTGGATCCTTCATTTATAGCATTTCTGAAGAATGAC

                                             
       2506 CATGAAACAAGTGGCATACTTTATAAGACATGG
         66 CATGAAACAAGTGGCATACTTTATAAGACATGG

                                                   **                        
       2539 GATAGAATTATAAGTCTCCCAATGAAACTTTGGATCCTTTGTTTATAGCATTTCTGAAGAATGAC
          1 GATAGAATTATAAGTCTCCCAATGAAACTTTGGATCCTTCATTTATAGCATTTCTGAAGAATGAC

                                             
       2604 CATGAAACAAGTGGCATACTTTATAAGACATGG
         66 CATGAAACAAGTGGCATACTTTATAAGACATGG

              
       2637 GA
          1 GA

       2639 GAGATGTGGG


Statistics
Matches: 98,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  98   98  1.00

ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31


Consensus pattern (98 bp):   
GATAGAATTATAAGTCTCCCAATGAAACTTTGGATCCTTCATTTATAGCATTTCTGAAGAATGAC
CATGAAACAAGTGGCATACTTTATAAGACATGG
Done.