Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00798.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1770
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28


Found at i:1231 original size:15 final size:15

Alignment explanation


    Indices: 1211--1246  Score: 54
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       1201 AGAAGGAGAA

                    *  *   
       1211 GAAGAAGACGATGAT
          1 GAAGAAGAAGAGGAT

                           
       1226 GAAGAAGAAGAGGAT
          1 GAAGAAGAAGAGGAT

                  
       1241 GAAGAA
          1 GAAGAA

       1247 AAAAAGAAGA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.53, C:0.03, G:0.36, T:0.08


Consensus pattern (15 bp):   
GAAGAAGAAGAGGAT

Found at i:1231 original size:18 final size:18

Alignment explanation


    Indices: 1208--1242  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1198 ACCAGAAGGA

                              
       1208 GAAGAAGAAGACGATGAT
          1 GAAGAAGAAGACGATGAT

                       *     
       1226 GAAGAAGAAGAGGATGA
          1 GAAGAAGAAGACGATGA

       1243 AGAAAAAAAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.51, C:0.03, G:0.37, T:0.09


Consensus pattern (18 bp):   
GAAGAAGAAGACGATGAT
Done.