Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00747.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 516

Length: 860
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31


Found at i:257 original size:16 final size:16

Alignment explanation


    Indices: 218--258  Score: 73
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        208 GGAAGTGGCG

                   *        
        218 GGAAGAAGGTTAGAAA
          1 GGAAGAATGTTAGAAA

                            
        234 GGAAGAATGTTAGAAA
          1 GGAAGAATGTTAGAAA

                     
        250 GGAAGAATG
          1 GGAAGAATG

        259 GTATAACAAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  16   24  1.00

ACGTcount: A:0.49, C:0.00, G:0.37, T:0.15


Consensus pattern (16 bp):   
GGAAGAATGTTAGAAA
Done.