Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00754.M3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3009
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:42 original size:6 final size:6

Alignment explanation


    Indices: 26--68  Score: 77
    Period size: 6  Copynumber: 7.2  Consensus size: 6

         16 ACCCATACGA

                   *                                          
         26 TCCCTT CCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
          1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T

         69 GGTTTTGAAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   6   35  1.00

ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49


Consensus pattern (6 bp):   
TCCCTT

Done.