Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00764.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6100
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:5838 original size:27 final size:28

Alignment explanation


    Indices: 5800--5854  Score: 94
    Period size: 27  Copynumber: 2.0  Consensus size: 28

       5790 AGAGATGGAG

                            *           
       5800 GTAAGTAAAAAAAAG-GGAAGAAAAAAC
          1 GTAAGTAAAAAAAAGAAGAAGAAAAAAC

                                        
       5827 GTAAGTAAAAAAAAGAAGAAGAAAAAAC
          1 GTAAGTAAAAAAAAGAAGAAGAAAAAAC

       5855 TAGTAGCATA


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  27   15  0.58
  28   11  0.42

ACGTcount: A:0.69, C:0.04, G:0.20, T:0.07


Consensus pattern (28 bp):   
GTAAGTAAAAAAAAGAAGAAGAAAAAAC

Done.