Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00766.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2981
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31


Found at i:1737 original size:17 final size:18

Alignment explanation


    Indices: 1704--1737  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1694 TTTATGAAAT

                              
       1704 TATAGGTTGTCCGGTTAC
          1 TATAGGTTGTCCGGTTAC

                *            
       1722 TATATGTTGT-CGGTTA
          1 TATAGGTTGTCCGGTTA

       1738 GTTTAGGTTC


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    6  0.40
  18    9  0.60

ACGTcount: A:0.18, C:0.12, G:0.26, T:0.44


Consensus pattern (18 bp):   
TATAGGTTGTCCGGTTAC

Found at i:2858 original size:6 final size:6

Alignment explanation


    Indices: 2849--2876  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       2839 AGAAAAAAAA

                                            
       2849 ACAGTG ACAGTG ACAGTG ACAGTG ACAG
          1 ACAGTG ACAGTG ACAGTG ACAGTG ACAG

       2877 GAATAACCTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.36, C:0.18, G:0.32, T:0.14


Consensus pattern (6 bp):   
ACAGTG

Done.