Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00779.M3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6294
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:5892 original size:13 final size:14

Alignment explanation


    Indices: 5871--5905  Score: 54
    Period size: 13  Copynumber: 2.6  Consensus size: 14

       5861 TTACAGAATC

                          
       5871 AAATGAAATTAT-T
          1 AAATGAAATTATCT

                *         
       5884 AAATTAAATTATCT
          1 AAATGAAATTATCT

                    
       5898 AAATGAAA
          1 AAATGAAA

       5906 ACTCTACACC


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  13   11  0.58
  14    8  0.42

ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34


Consensus pattern (14 bp):   
AAATGAAATTATCT
Done.