Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00780.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 750

Length: 1251
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36


Found at i:890 original size:13 final size:13

Alignment explanation


    Indices: 874--900  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        864 TGTTATTGAT

                         
        874 GTTAAAAGTCTCA
          1 GTTAAAAGTCTCA

                         
        887 GTTAAAAGTCTCA
          1 GTTAAAAGTCTCA

             
        900 G
          1 G

        901 CTAACTAGTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30


Consensus pattern (13 bp):   
GTTAAAAGTCTCA
Done.