Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00787.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2342
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:2237 original size:18 final size:19

Alignment explanation


    Indices: 2206--2254  Score: 59
    Period size: 18  Copynumber: 2.7  Consensus size: 19

       2196 TGATAATCTG

                      *        
       2206 TGTA-TTTGTATTTG-TAT
          1 TGTATTTTGTTTTTGTTAT

                             * 
       2223 TGTATTTTGTTTTTGTTTT
          1 TGTATTTTGTTTTTGTTAT

                          
       2242 TGT-TTTTGTTTTT
          1 TGTATTTTGTTTTT

       2255 TAATTTATCA


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  17    4  0.14
  18   19  0.68
  19    5  0.18

ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76


Consensus pattern (19 bp):   
TGTATTTTGTTTTTGTTAT

Found at i:2255 original size:7 final size:6

Alignment explanation


    Indices: 2222--2254  Score: 57
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       2212 TGTATTTGTA

                                                  
       2222 TTGTATT TTGTTT TTGTTT TTGTTT TTGTTT TT
          1 TTGT-TT TTGTTT TTGTTT TTGTTT TTGTTT TT

       2255 TAATTTATCA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6   22  0.85
   7    4  0.15

ACGTcount: A:0.03, C:0.00, G:0.15, T:0.82


Consensus pattern (6 bp):   
TTGTTT
Done.