Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00789.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5454
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:5099 original size:39 final size:39

Alignment explanation


    Indices: 5041--5120  Score: 124
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       5031 TCCTTATGCA

                                *      *           
       5041 TTAAAGTCATATTTCTAAAGTTATTCTTAGTGTCACCCC
          1 TTAAAGTCATATTTCTAAAGCTATTCTCAGTGTCACCCC

                          *                     *  
       5080 TTAAAGTCATATTTTTAAAGCTATTCTCAGTGTCACTCC
          1 TTAAAGTCATATTTCTAAAGCTATTCTCAGTGTCACCCC

              
       5119 TT
          1 TT

       5121 GAATCGAGAC


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  39   37  1.00

ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42


Consensus pattern (39 bp):   
TTAAAGTCATATTTCTAAAGCTATTCTCAGTGTCACCCC
Done.