Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00801.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 980

Length: 1634
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28


Found at i:707 original size:25 final size:25

Alignment explanation


    Indices: 679--730  Score: 95
    Period size: 25  Copynumber: 2.1  Consensus size: 25

        669 TTTAAGGTTG

                      *              
        679 GTTTGATTTCGAGGTTAAATGGCTA
          1 GTTTGATTTCAAGGTTAAATGGCTA

                                     
        704 GTTTGATTTCAAGGTTAAATGGCTA
          1 GTTTGATTTCAAGGTTAAATGGCTA

              
        729 GT
          1 GT

        731 AATATGGATG


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.25, C:0.08, G:0.27, T:0.40


Consensus pattern (25 bp):   
GTTTGATTTCAAGGTTAAATGGCTA
Done.