Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00803.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 348

Length: 580
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23


Found at i:56 original size:21 final size:21

Alignment explanation


    Indices: 1--57  Score: 66
    Period size: 18  Copynumber: 2.9  Consensus size: 21

                           *     
          1 GAAGAAAGAAGGCGGCGGAGA
          1 GAAGAAAGAAGGCGGTGGAGA

                  *           *  
         22 GAAGAAGGAA---GGTGGGGA
          1 GAAGAAAGAAGGCGGTGGAGA

                              
         40 GAAGAAAGAAGGCGGTGG
          1 GAAGAAAGAAGGCGGTGG

         58 TGAAGCCAAG


Statistics
Matches: 29,  Mismatches: 4, Indels: 6
        0.74            0.10        0.15

Matches are distributed among these distances:
  18   15  0.52
  21   14  0.48

ACGTcount: A:0.40, C:0.05, G:0.51, T:0.04


Consensus pattern (21 bp):   
GAAGAAAGAAGGCGGTGGAGA
Done.