Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00832.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3678
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34


Found at i:2380 original size:37 final size:37

Alignment explanation


    Indices: 2325--2396  Score: 92
    Period size: 37  Copynumber: 1.9  Consensus size: 37

       2315 AAGTGTTAAA

                  *              *    *          
       2325 TGTAGATAGAGAGTTTCTTATGGTTTGGAATTTAGTT
          1 TGTAGACAGAGAGTTTCTTATAGTTTAGAATTTAGTT

                                          *     
       2362 TGTAGACAGAGAAG-TTCTTATAGTTTAGAGTTTAG
          1 TGTAGACAGAG-AGTTTCTTATAGTTTAGAATTTAG

       2397 GGTTTTAGGT


Statistics
Matches: 30,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  37   28  0.93
  38    2  0.07

ACGTcount: A:0.28, C:0.04, G:0.26, T:0.42


Consensus pattern (37 bp):   
TGTAGACAGAGAGTTTCTTATAGTTTAGAATTTAGTT
Done.