Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00837.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 913

Length: 1523
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27


Found at i:917 original size:14 final size:16

Alignment explanation


    Indices: 887--918  Score: 50
    Period size: 15  Copynumber: 2.1  Consensus size: 16

        877 TAAAACCAAG

                            
        887 ATATCAAAAAATGAAA
          1 ATATCAAAAAATGAAA

                            
        903 ATAT-AAAAAAT-AAA
          1 ATATCAAAAAATGAAA

              
        917 AT
          1 AT

        919 TTAATTTAAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  14    5  0.31
  15    7  0.44
  16    4  0.25

ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22


Consensus pattern (16 bp):   
ATATCAAAAAATGAAA
Done.