Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00849.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2226
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28


Found at i:63 original size:13 final size:13

Alignment explanation


    Indices: 45--69  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         35 TATTACATAA

                         
         45 AAGAAAAAGGAAG
          1 AAGAAAAAGGAAG

                        
         58 AAGAAAAAGGAA
          1 AAGAAAAAGGAA

         70 CTGATGGAGG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00


Consensus pattern (13 bp):   
AAGAAAAAGGAAG
Done.