Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00853.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1031
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31


Found at i:55 original size:6 final size:6

Alignment explanation


    Indices: 41--81  Score: 64
    Period size: 6  Copynumber: 6.8  Consensus size: 6

         31 TTTCTCTCCT

                *                            *             
         41 TTCCTC TTCCCC TTCCCC TTCCCC TTCCCT TTCCCC TTCCC
          1 TTCCCC TTCCCC TTCCCC TTCCCC TTCCCC TTCCCC TTCCC

         82 GTTGGGTTGC


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   32  1.00

ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39


Consensus pattern (6 bp):   
TTCCCC

Done.