Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00860.C3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4969
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:1055 original size:17 final size:17

Alignment explanation


    Indices: 1019--1057  Score: 51
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       1009 ACCTCGCAGT

                         * * 
       1019 TTTGGTGAGCTCATAGA
          1 TTTGGTGAGCTCACACA

                        *    
       1036 TTTGGTGAGCTCGCACA
          1 TTTGGTGAGCTCACACA

                 
       1053 TTTGG
          1 TTTGG

       1058 AGAGTTTGCA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.18, C:0.15, G:0.31, T:0.36


Consensus pattern (17 bp):   
TTTGGTGAGCTCACACA
Done.