Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00825.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 938

Length: 1564
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32


Found at i:1035 original size:49 final size:49

Alignment explanation


    Indices: 963--1109  Score: 294
    Period size: 49  Copynumber: 3.0  Consensus size: 49

        953 GTTTTTCATT

                                                             
        963 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
          1 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA

                                                             
       1012 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
          1 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA

                                                             
       1061 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
          1 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA

       1110 TGTCGATGAA


Statistics
Matches: 98,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  49   98  1.00

ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45


Consensus pattern (49 bp):   
CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
Done.