Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00872.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3751
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36


Found at i:2734 original size:27 final size:27

Alignment explanation


    Indices: 2696--2749  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2686 TATTTTTATT

                                       
       2696 ATTTGAGTAAGGTGAGCAGTAAAACCC
          1 ATTTGAGTAAGGTGAGCAGTAAAACCC

                                       
       2723 ATTTGAGTAAGGTGAGCAGTAAAACCC
          1 ATTTGAGTAAGGTGAGCAGTAAAACCC

       2750 CGTAAACATC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22


Consensus pattern (27 bp):   
ATTTGAGTAAGGTGAGCAGTAAAACCC
Done.