Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00875.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3924
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:3625 original size:24 final size:24

Alignment explanation


    Indices: 3593--3643  Score: 102
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       3583 ACTTCTTGTT

                                    
       3593 AGGAAATGGAGGAATAATGCTGTA
          1 AGGAAATGGAGGAATAATGCTGTA

                                    
       3617 AGGAAATGGAGGAATAATGCTGTA
          1 AGGAAATGGAGGAATAATGCTGTA

               
       3641 AGG
          1 AGG

       3644 TGAATGAATG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.41, C:0.04, G:0.35, T:0.20


Consensus pattern (24 bp):   
AGGAAATGGAGGAATAATGCTGTA
Done.