Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00875.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3884
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:3586 original size:24 final size:24

Alignment explanation


    Indices: 3554--3603  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       3544 GTATTAAAGT

                                    
       3554 GGAAATGGAGGAATAATGCTGTAA
          1 GGAAATGGAGGAATAATGCTGTAA

                                    
       3578 GGAAATGGAGGAATAATGCTGTAA
          1 GGAAATGGAGGAATAATGCTGTAA

              
       3602 GG
          1 GG

       3604 TGAATGAATG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.40, C:0.04, G:0.36, T:0.20


Consensus pattern (24 bp):   
GGAAATGGAGGAATAATGCTGTAA
Done.