Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00825.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2603
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35


Found at i:1632 original size:49 final size:49

Alignment explanation


    Indices: 1560--1706  Score: 294
    Period size: 49  Copynumber: 3.0  Consensus size: 49

       1550 GTTTTTCATT

                                                             
       1560 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
          1 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA

                                                             
       1609 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
          1 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA

                                                             
       1658 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
          1 CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA

       1707 TGTCGATGAA


Statistics
Matches: 98,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  49   98  1.00

ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45


Consensus pattern (49 bp):   
CTTTATATCCTAGATCTATTTTCCATGCAATCATGTTCTGGTTTCGTGA
Done.