Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00884.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 976

Length: 1628
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31


Found at i:82 original size:6 final size:6

Alignment explanation


    Indices: 42--84  Score: 59
    Period size: 6  Copynumber: 7.2  Consensus size: 6

         32 ACCCATACGA

                   *      *                 *                 
         42 TCCCTT CCCCTT CCCCTT TCCCTT TCCCAT TCCCTT TCCCTT T
          1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T

         85 GGTTTTGAAA


Statistics
Matches: 33,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.02, C:0.53, G:0.00, T:0.44


Consensus pattern (6 bp):   
TCCCTT

Done.