Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00888.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 573

Length: 955
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:861 original size:22 final size:22

Alignment explanation


    Indices: 826--876  Score: 59
    Period size: 22  Copynumber: 2.4  Consensus size: 22

        816 CCCACCTTTC

                      *    *   *  
        826 AATTA-TTAATTTTTTAAATTT
          1 AATTATTTAACTTTTCAAAATT

                                  
        847 AATTATTTAACTTTTCAAAATT
          1 AATTATTTAACTTTTCAAAATT

              *     
        869 AAATATTT
          1 AATTATTT

        877 TAGCCACTCT


Statistics
Matches: 25,  Mismatches: 4, Indels: 1
        0.83            0.13        0.03

Matches are distributed among these distances:
  21    5  0.20
  22   20  0.80

ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55


Consensus pattern (22 bp):   
AATTATTTAACTTTTCAAAATT
Done.