Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00894.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 981

Length: 1635
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:746 original size:193 final size:194

Alignment explanation


    Indices: 393--779  Score: 582
    Period size: 193  Copynumber: 2.0  Consensus size: 194

        383 ATTTGATACT

                      **                                        *            
        393 AATATTTTTCTGAAGCACCCAAGTTTGACTTCAATGTTCTATTTAGAATCCGGGAAAGTTATGGT
          1 AATATTTTTCCCAAGCACCCAAGTTTGACTTCAATGTTCTATTTAGAATCCGAGAAAGTTATGGT

                                                                             
        458 CCCAAGTAAGCATCTATAATTTTTTTACTAGATTAGACATCAAAGACTCGTTGGACCACATGATG
         66 CCCAAGTAAGCATCTATAATTTTTTTACTAGATTAGACATCAAAGACTCGTTGGACCACATGATG

                                   *          *                       *     
        523 CCATTTGGTTTAGGTACCAAATTGAACATTGAAATCAAACTCAGGTAGCAAATTAGGATGAATG
        131 CCATTTGGTTTAGGTACCAAATTCAACATTGAAACCAAACTCAGGTAGCAAATTAGGACGAATG

                           *                              *         *   *    
        587 AATATTTTTCCCAAGTA-CCAAGTTTGACTTCAATGTTCTATTTAGTATCCGAGAATGTTTTGGT
          1 AATATTTTTCCCAAGCACCCAAGTTTGACTTCAATGTTCTATTTAGAATCCGAGAAAGTTATGGT

                **    *                         *        *           *       
        651 CCCATTTAAGTATCTAT-ATTCTTTTTACTAGATTATACATCAAATACTCGTTGGACTACATGAT
         66 CCCAAGTAAGCATCTATAATT-TTTTTACTAGATTAGACATCAAAGACTCGTTGGACCACATGAT

                                               *                             
        715 GCCATTTGGTTTAGGTACC-AATGTCAACATTGAAGCCAAACTCAGGTAGCAAATTAGGACGAAT
        130 GCCATTTGGTTTAGGTACCAAAT-TCAACATTGAAACCAAACTCAGGTAGCAAATTAGGACGAAT

             
        779 G
        194 G

        780 GAAACTTAGG


Statistics
Matches: 174,  Mismatches: 17, Indels: 5
        0.89            0.09        0.03

Matches are distributed among these distances:
 192    6  0.03
 193  154  0.89
 194   14  0.08

ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Consensus pattern (194 bp):   
AATATTTTTCCCAAGCACCCAAGTTTGACTTCAATGTTCTATTTAGAATCCGAGAAAGTTATGGT
CCCAAGTAAGCATCTATAATTTTTTTACTAGATTAGACATCAAAGACTCGTTGGACCACATGATG
CCATTTGGTTTAGGTACCAAATTCAACATTGAAACCAAACTCAGGTAGCAAATTAGGACGAATG
Done.