Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00927.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4379
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:3311 original size:30 final size:30

Alignment explanation


    Indices: 3277--3337  Score: 95
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       3267 TTCCCGAGCC

                                          
       3277 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
          1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT

                       *     * *          
       3307 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
          1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT

             
       3337 T
          1 T

       3338 GAGTTAAGGA


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30


Consensus pattern (30 bp):   
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Done.