Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00927.N7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 407

Length: 679
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35


Found at i:563 original size:100 final size:100

Alignment explanation


    Indices: 390--589  Score: 355
    Period size: 100  Copynumber: 2.0  Consensus size: 100

        380 GCTCATTCAG

                                                          * *             *  
        390 TGCCGCAGATGTTAGCTAGAGTTGGAGCTCGCCGGAGGTTAAATCATATTATCAAACTATTGGTC
          1 TGCCGCAGATGTTAGCTAGAGTTGGAGCTCGCCGGAGGTTAAATCAGACTATCAAACTATTGATC

                                               
        455 GATATATAAAGGTTTTAAAGCATGATATGAGCCTT
         66 GATATATAAAGGTTTTAAAGCATGATATGAGCCTT

                             *                                               
        490 TGCCGCAGATGTTAGCTCGAGTTGGAGCTCGCCGGAGGTTAAATCAGACTATCAAACTATTGATC
          1 TGCCGCAGATGTTAGCTAGAGTTGGAGCTCGCCGGAGGTTAAATCAGACTATCAAACTATTGATC

                                         *     
        555 GATATATAAAGGTTTTAAAGCATGATATGGGCCTT
         66 GATATATAAAGGTTTTAAAGCATGATATGAGCCTT

        590 GTAAGTTTTT


Statistics
Matches: 95,  Mismatches: 5, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 100   95  1.00

ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30


Consensus pattern (100 bp):   
TGCCGCAGATGTTAGCTAGAGTTGGAGCTCGCCGGAGGTTAAATCAGACTATCAAACTATTGATC
GATATATAAAGGTTTTAAAGCATGATATGAGCCTT
Done.