Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00935.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 744

Length: 1241
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24


Found at i:992 original size:21 final size:22

Alignment explanation


    Indices: 966--1007  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        956 GGAGTTTTTG

                                  
        966 GAAAGGAAAA-GAGAAAGGAAA
          1 GAAAGGAAAATGAGAAAGGAAA

                            *    
        987 GAAAGGAAAATGAGAAGGGAA
          1 GAAAGGAAAATGAGAAAGGAA

       1008 GGGACTTTAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   10  0.53
  22    9  0.47

ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02


Consensus pattern (22 bp):   
GAAAGGAAAATGAGAAAGGAAA

Done.