Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00937.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2011
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:104 original size:6 final size:6

Alignment explanation


    Indices: 88--124  Score: 65
    Period size: 6  Copynumber: 6.2  Consensus size: 6

         78 ACCCATACGA

                   *                                   
         88 TCCCTT CCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
          1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T

        125 AGTTTTGAAA


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49


Consensus pattern (6 bp):   
TCCCTT

Found at i:1018 original size:22 final size:23

Alignment explanation


    Indices: 967--1019  Score: 76
    Period size: 22  Copynumber: 2.4  Consensus size: 23

        957 AGAAAACCAT

                                   
        967 TTTAT-GTGTTAAATGCTGAAAA
          1 TTTATGGTGTTAAATGCTGAAAA

                                *  
        989 TTTA-GGTGTTAAATGCTG-CAA
          1 TTTATGGTGTTAAATGCTGAAAA

                      
       1010 TTTATGGTGT
          1 TTTATGGTGT

       1020 CTGAAAGTTG


Statistics
Matches: 28,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  21    6  0.21
  22   22  0.79

ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43


Consensus pattern (23 bp):   
TTTATGGTGTTAAATGCTGAAAA
Done.