Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00950.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1850
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34


Found at i:268 original size:17 final size:17

Alignment explanation


    Indices: 246--278  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        236 AAAATTTAGC

                             
        246 TACTCTTTTTCTCTCGT
          1 TACTCTTTTTCTCTCGT

                            
        263 TACTCTTTTTCTCTCG
          1 TACTCTTTTTCTCTCG

        279 ATCCTTCGTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.06, C:0.30, G:0.06, T:0.58


Consensus pattern (17 bp):   
TACTCTTTTTCTCTCGT
Done.