Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g00952.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5868
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37


Found at i:4939 original size:39 final size:39

Alignment explanation


    Indices: 4887--5071  Score: 262
    Period size: 39  Copynumber: 4.7  Consensus size: 39

       4877 TGTGTGAGAT

                   *                            * *
       4887 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
          1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA

                    *                           *  
       4926 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
          1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA

                                                   
       4965 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
          1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA

                       *     *                    *
       5004 TTATATCCGGGTTAAGTTCCGAAGGCATTCGTGCTGATG
          1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA

                  *    *     * *         
       5043 TTATATTCGGGTTAAGTTCTGAAGGCATT
          1 TTATATCCGGGCTAAGTCCCGAAGGCATT

       5072 TGGGTTGGAA


Statistics
Matches: 136,  Mismatches: 10, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  39  136  1.00

ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32


Consensus pattern (39 bp):   
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA

Done.